Prevalence of Isolated Bacteria from Urinary Tracts and Antibiotic Resistance Trend in Peja Region, Kosovo

Ilirjana Loxhaj, Sanije Hoxha-Gashi, Sunchica Petrovska, Sadushe Loxha

 
International Journal of Biomedicine. 2023;13(2):313-320.
DOI: 10.21103/Article13(2)_OA22
Originally published June 5, 2023

Abstract: 

Background: Urinary tract infections are the most frequent bacterial infections, causing significant morbidity at a high cost of effectiveness. The main purpose of the research was to determine the prevalence and the resistance of gram-negative bacteria in urine samples in the Peja region.
Methods and Results: This cohort longitudinal, prospective-retrospective study was conducted in the microbiological laboratories of the regional hospital in Peja and the Regional Centre of Public Health in Peja. The research includes all urine samples tested for gram-negative bacteria from 2018 to 2020. A total of 12,791 urine samples were analyzed in the study, of which 2316 (18.11%) were positive for the growth of gram-negative pathogenic strains, and 10,479 (81.89%) were negative. The most frequently isolated bacteria were E. coli (83.2%), followed by Proteus spp., Klebsiella spp.Acinetobacter spp., and Pseudomonas aeruginosa (5.18%, 4.79%, 2.42% and 2.37% respectively). From the data of our research, we can conclude that E. coliProteus spp, and Klebsiella spp. were the three commonly isolated microorganisms in the Peja region.
A trend of increased resistance of E. coli to ampicillin was registered from 37.41% in 2018 to 65.58% in 2020; to tobramycin - from 3.68% in 2018 to 5.97% in 2020; to cefalexin from 29.41% in 2018 to 31.09% in 2020; to cefuroxime from 23.7% in 2018 to 28.99% in 2020; to cefotaxime from 21.32% in 2018 to 27.94% in 2020; ceftazidime from 18.84% in 2018 to 27.54% in 2020; to piperacillin from 28.73% in 2018 to 34.97% in 2020; to nitrofurantoin from 5.98% in 2018 to 8.21% in 2020; and to trimethoprim/sulfamethoxazole from 35.56% in 2018 to 42.77% in 2020. In the analyzed period, a trend of the increased resistance of Proteus spp. to ampicillin was registered from 31.43% in 2018 to 81.25% in 2020 and to imipenem from 4.76% in 2018 to 12% in 2020. The resistance rates of Klebsiella spp. strains isolated in 2020 (100% to ampicillin, 5% to amikacin, 38.46% to ofloxacin, 8.7% to imipenem, 33.33% to nitrofurantoin) were higher than those reported in 2018 (87.5%, 2.94%, 34.62%, 6.25%, and 28.21%, respectively).
Conclusion: Data from this study can be used to control antibiotic susceptibility trends, create local antibiotic policies, and help clinicians in the rational choice of antibiotic therapy, thereby preventing indiscriminate antibiotic use.

Keywords: 
urinary tract infections • gram-negative bacteria • antibiotic resistance
References: 
  1. Gupta K, Hooton TM, Naber KG, Wullt B, Colgan R, Miller LG, Moran GJ, Nicolle LE, Raz R, Schaeffer AJ, Soper DE; Infectious Diseases Society of America; European Society for Microbiology and Infectious Diseases. International clinical practice guidelines for the treatment of acute uncomplicated cystitis and pyelonephritis in women: A 2010 update by the Infectious Diseases Society of America and the European Society for Microbiology and Infectious Diseases. Clin Infect Dis. 2011 Mar 1;52(5):e103-20. doi: 10.1093/cid/ciq257.
  2. Wiedemann B, Heisig A, Heisig P. Uncomplicated Urinary Tract Infections and Antibiotic Resistance-Epidemiological and Mechanistic Aspects. Antibiotics (Basel). 2014 Jul 22;3(3):341-52. doi: 10.3390/antibiotics3030341. 
  3. Flores-Mireles AL, Walker JN, Caparon M, Hultgren SJ. Urinary tract infections: epidemiology, mechanisms of infection and treatment options. Nat Rev Microbiol. 2015 May;13(5):269-84. doi: 10.1038/nrmicro3432.
  4. Zone CP, Guide S. Antimicrobial resistance and urinary tract infections in the community. Signs. 2017;6:3531-93.
  5. Kolawole AS, Kolawole OM, Kandaki-Olukemi YT, Babatunde SK, Durowade KA, Kolawole CF. Prevalence of urinary tract infections (UTI) among patients attending Dalhatu Araf Specialist Hospital, Lafia, Nasarawa State, Nigeria. Int J Med Sci. 2009;1:163–167.
  6. Dias-Neto JA, Silva LDM, Martins ACP: Prevalence and bacterial susceptibility of hospital acquired urinary tract infection. Acta Cir Bras.  2003;18(Supl 5):36–38.
  7. Khorvash F, Mostafavizadeh K, Mobasherizadeh S, Behjati M: A Comparison of antibiotic susceptibility patterns of klebsiella associated urinary tract infection in spinal cord injured patients with nosocomial infection. Acta Med Iran 2009, 47:447–450. 20
  8. Medina M, Castillo-Pino E. An introduction to the epidemiology and burden of urinary tract infections. Ther Adv Urol. 2019 May 2;11:1756287219832172. doi: 10.1177/1756287219832172. 
  9. Magill SS, Edwards JR, Bamberg W, Beldavs ZG, Dumyati G, Kainer MA, Lynfield R, Maloney M, McAllister-Hollod L, Nadle J, Ray SM, Thompson DL, Wilson LE, Fridkin SK; Emerging Infections Program Healthcare-Associated Infections and Antimicrobial Use Prevalence Survey Team. Multistate point-prevalence survey of health care-associated infections. N Engl J Med. 2014 Mar 27;370(13):1198-208. doi: 10.1056/NEJMoa1306801. Erratum in: N Engl J Med. 2022 Jun 16;386(24):2348. 
  10. Tandogdu Z, Wagenlehner FM. Global epidemiology of urinary tract infections. Curr Opin Infect Dis. 2016 Feb;29(1):73-9. doi: 10.1097/QCO.0000000000000228. 
  11. Haider G, Zehra N, Munir AA, Haider A. Risk factors of urinary tract infection in pregnancy. J Pak Med Assoc. 2010 Mar;60(3):213-6. 
  12. Ahmed SS, Shariq A, Alsalloom AA, Babikir IH, Alhomoud BN. Uropathogens and their antimicrobial resistance patterns: Relationship with urinary tract infections. Int J Health Sci (Qassim). 2019 Mar-Apr;13(2):48-55. 
  13. Kader AA, Kumar A, Dass SM. Antimicrobial resistance patterns of gram-negative bacteria isolated from urine cultures at a general hospital. Saudi J Kidney Dis Transpl. 2004 Apr-Jun;15(2):135-9.
  14. Gomila A, Shaw E, Carratalà J, Leibovici L, Tebé C, Wiegand I, Vallejo-Torres L, Vigo JM, Morris S, Stoddart M, Grier S, Vank C, Cuperus N, Van den Heuvel L, Eliakim-Raz N, Vuong C, MacGowan A, Addy I, Pujol M; COMBACTE-MAGNET WP5- RESCUING Study. Predictive factors for multidrug-resistant gram-negative bacteria among hospitalised patients with complicated urinary tract infections. Antimicrob Resist Infect Control. 2018 Sep 14;7:111. doi: 10.1186/s13756-018-0401-6.
  15. Serra-Burriel M, Keys M, Campillo-Artero C, Agodi A, Barchitta M, Gikas A, Palos C, López-Casasnovas G. Impact of multi-drug resistant bacteria on economic and clinical outcomes of healthcare-associated infections in adults: Systematic review and meta-analysis. PLoS One. 2020 Jan 10;15(1):e0227139. doi: 10.1371/journal.pone.0227139. 
  16. Exner M, Bhattacharya S, Christiansen B, Gebel J, Goroncy-Bermes P, Hartemann P, Heeg P, Ilschner C, Kramer A, Larson E, Merkens W, Mielke M, Oltmanns P, Ross B, Rotter M, Schmithausen RM, Sonntag HG, Trautmann M. Antibiotic resistance: What is so special about multidrug-resistant Gram-negative bacteria? GMS Hyg Infect Control. 2017 Apr 10;12:Doc05. doi: 10.3205/dgkh000290.
  17. Mazzariol A, Bazaj A, Cornaglia G. Multi-drug-resistant Gram-negative bacteria causing urinary tract infections: a review. J Chemother. 2017 Dec;29(sup1):2-9. doi: 10.1080/1120009X.2017.1380395. 
  18. Abduzaimovic A, Aljicevic M, Rebic V, Vranic SM, Abduzaimovic K, Sestic S. Antibiotic Resistance in Urinary Isolates of Escherichia coli. Mater Sociomed. 2016 Dec;28(6):416-419. doi: 10.5455/msm.2016.28.416-419. 
  19. Alqasim A, Abu Jaffal A, Alyousef AA. Prevalence of Multidrug Resistance and Extended-Spectrum β-Lactamase Carriage of Clinical Uropathogenic Escherichia coli Isolates in Riyadh, Saudi Arabia. Int J Microbiol. 2018 Sep 16;2018:3026851. doi: 10.1155/2018/3026851. 
  20. WHO Report on Surveillance of Antibiotic Consumption, 2016-2018. Available from:  chrome-extension://efaidnbmnnnibpcajpcglclefindmkaj/https://eody.gov.gr/wp-content/uploads/2019/01/who_amr_amc_report_201811...
  21. Zajmi D, Berisha M, Begolli I, Hoxha R, Mehmeti R, Mulliqi-Osmani G, Kurti A, Loku A, Raka L. Public knowledge, attitudes and practices regarding antibiotic use in Kosovo. Pharm Pract (Granada). 2017 Jan-Mar;15(1):827. doi: 10.18549/PharmPract.2017.01.827. 
  22. Gomila A, Shaw E, Carratalà J, Leibovici L, Tebé C, Wiegand I, Vallejo-Torres L, Vigo JM, Morris S, Stoddart M, Grier S, Vank C, Cuperus N, Van den Heuvel L, Eliakim-Raz N, Vuong C, MacGowan A, Addy I, Pujol M; COMBACTE-MAGNET WP5- RESCUING Study. Predictive factors for multidrug-resistant gram-negative bacteria among hospitalised patients with complicated urinary tract infections. Antimicrob Resist Infect Control. 2018 Sep 14;7:111. doi: 10.1186/s13756-018-0401-6.
  23. Gj.Mulliqi-Osmani, L.Raka. Mostrimi në mikrobiologjinë klinike, Prishtinë, 2013,43-47(83).
  24. Iregbu, K.C.; Nwajiobi-Princewill, P.I. Urinary tract infections in a tertiary hospital in Abuja, Nigeria. AJOJ 2013, 14, 169–173.
  25. Raka L, Mulliqi-Osmani G, Berisha L, Begolli L, Omeragiq S, Parsons L, Salfinger M, Jaka A, Kurti A, Jakupi X. Etiology and susceptibility of urinary tract isolates in Kosova. Int J Antimicrob Agents. 2004 Mar;23 Suppl 1:S2-5. doi: 10.1016/j.ijantimicag.2003.09.009. 
  26. Mohammadi S, Ramazanzade R, Zandi S, Rouhi S, Mohammadi B. Determination of Prevalence of isolated bacteria from urinary tracts and antibiotic resistant pattern of them in Tohid hospital of Sanandaj (2013-2014). Zanko J Med Sci. 2015;16(50):55-62
  27. Medina M, Castillo-Pino E. An introduction to the epidemiology and burden of urinary tract infections. Ther Adv Urol. 2019 May 2;11:1756287219832172. doi: 10.1177/1756287219832172. 
  28. He K, Hu Y, Shi JC, Zhu YQ, Mao XM. Prevalence, risk factors and microorganisms of urinary tract infections in patients with type 2 diabetes mellitus: a retrospective study in China. Ther Clin Risk Manag. 2018 Feb 26;14:403-408. doi: 10.2147/TCRM.S147078.
  29. Wilson AP, Livermore DM, Otter JA, Warren RE, Jenks P, Enoch DA, Newsholme W, Oppenheim B, Leanord A, McNulty C, Tanner G, Bennett S, Cann M, Bostock J, Collins E, Peckitt S, Ritchie L, Fry C, Hawkey P. Prevention and control of multi-drug-resistant Gram-negative bacteria: recommendations from a Joint Working Party. J Hosp Infect. 2016 Jan;92 Suppl 1:S1-44. doi: 10.1016/j.jhin.2015.08.007. 
  30. Bitew A, Molalign T, Chanie M. Species distribution and antibiotic susceptibility profile of bacterial uropathogens among patients complaining urinary tract infections. BMC Infect Dis. 2017 Sep 29;17(1):654. doi: 10.1186/s12879-017-2743-8. 
  31. De Francesco MA, Ravizzola G, Peroni L, Negrini R, Manca N. Urinary tract infections in Brescia, Italy: etiology of uropathogens and antimicrobial resistance of common uropathogens. Med Sci Monit. 2007 Jun;13(6):BR136-44.

Download Article
Received April 7, 2023.
Accepted May 24, 2023.
©2023 International Medical Research and Development Corporation.